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Department of Bioproducts and Biosystems

Enzyme Technology

The Enzyme Technology group is led by Professor Miia Mäkelä. Our research focuses on the enzymatic degradation and conversion of wood and other plant biomass to develop sustainable solutions for valuable bioproducts. One of our key interests is the discovery and engineering of new enzyme candidates from the wealth of fungal genome data. We also address transcriptional regulation, sugar transport and metabolic pathways in filamentous fungi, aiming to apply this molecular level knowledge to generate fungal cell factories.
3D model of an enzyme-substrate complex

Research topics

  • Discovery and engineering of biomass converting enzymes
  • Regulation of lignocellulose degradation by fungi
  • Aromatic and sugar metabolic enzymes of wood-degrading fungi 
  • Filamentous fungal sugar transporters

We apply and develop diverse methods including functional genomics, modern genome editing methodologies, recombinant protein production, various omics-based methods, machine learning pipelines and protein modelling.

Examples of ongoing research projects

Fungi on agar media

METAFUNG – Intracellular metabolism of lignocellulose-derived sugars and aromatic compounds in lignin-degrading white rot fungi

Fungi are the most important organisms for plant biomass degradation in nature with a significant role in carbon and nutrient cycling. In addition, fungi and their enzymes and metabolites are widely used in different biotechnology sectors. METAFUNG project funded by the Research Council of Finland (former Academy of Finland) aims to capture sugar and aromatic metabolic pathways in wood-degrading basidiomycete fungi. The results of the study will shed light on the differences in fungal degradation abilities as well as provide novel options to be used for example in synthetic biology and microbial cell factories.

Composite image: Miia Mäkelä

MYCOFACT: The dual role of sugar transporters in plant biomass conversion by fungi to improve microbial cell factories

Plant biomass conversion process by fungi includes four key factors: extracellular enzymatic degradation, uptake and intracellular catabolism of the resulting sugars, and its regulatory system. In contrast to extensive studies in the other three aspects, sugar transport has been barely touched, largely due to previous technical limitations.
 
The Novo Nordisk Foundation Ascending Investigator project MYCOFACT aims to not only fill this gap by classifying the influence of sugar transport on plant biomass conversion in filamentous fungi but also provide a novel approach to improve plant biomass using fungal cell factories through combined manipulation of sugar transport and regulatory systems.

Group members

Interested in working with us?

For further information contact: miia.makela@aalto.fi

Latest publications

Astrid Müller, Miia R. Mäkelä, Ronald P. de Vries 2025 Advances in Applied Microbiology

Astrid Müller, Jiali Meng, Robin Kuijpers, Miia R. Mäkelä, Ronald P. de Vries 2025 Enzyme and Microbial Technology

J. L. Nybo, T. C. Vesth, S. Theobald, J. C. Frisvad, T. O. Larsen, I. Kjaerboelling, K. Rothschild-Mancinelli, E. K. Lyhne, K. Barry, A. Clum, Y. Yoshinaga, L. Ledsgaard, C. Daum, A. Lipzen, A. Kuo, R. Riley, S. Mondo, K. LaButti, S. Haridas, J. Pangalinan, A. A. Salamov, B. A. Simmons, J. K. Magnuson, J. Chen, E. Drula, B. Henrissat, A. Wiebenga, R. J.M. Lubbers, A. Müller, A. C. dos Santos Gomes, M. R. Mäkelä, J. E. Stajich, I. V. Grigoriev, U. H. Mortensen, R. P. de Vries, S. E. Baker, M. R. Andersen 2025 Studies in Mycology

Agata Terebieniec, Li Xu, Mao Peng, Miia R. Mäkelä, Ronald P. de Vries 2025 Journal of Fungi

Sebastian Theobald, Tammi Vesth, Jane L. Nybo, Jens C. Frisvad, Inge Kjærbølling, Stephen Mondo, Kurt LaButti, Sajeet Haridas, Robert Riley, Alan A. Kuo, Asaf A. Salamov, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Mi Yan, Kerrie Barry, Alicia Clum, Ellen K. Lyhne, Elodie Drula, Ad Wiebenga, Astrid Müller, Ronnie J.M. Lubbers, Roland S. Kun, Ana Carolina dos Santos Gomes, Miia R. Mäkelä, Bernard Henrissat, Blake A. Simmons, Jon K. Magnuson, Jakob B. Hoof, Uffe H. Mortensen, Paul S. Dyer, Michelle Momany, Thomas O. Larsen, Igor V. Grigoriev, Scott E. Baker, Ronald P. de Vries, Mikael R. Andersen 2025 Current research in microbial sciences

R Baroncelli, JF Cobo-Díaz, T Benocci, E Battaglia, S Haridas, W Andreopoulos, K LaButti, J Pangilinan, A Lipzen, M Koriabine, D Bauer, G Le Floch, Miia Mäkelä, E Drula, B Henrissat, IV Grigoriev, JA Crouch, RP de Vries, SA Sukno, SA Thon 2024 GigaScience

Victor Manuel Gonzalez Ramos, Astrid Müller, Mao Peng, Megan Pawlowski, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Ronald de Vries, Igor Grigoriev, Joanna Kowalczyk, Miia Mäkelä 2024 Current Research in Biotechnology

Sebastian Theobald, Tammi C. Vesth, Elena Geib, Jane L. Nybo, Jens C. Frisvad, Thomas O. Larsen, Alan Kuo, Kurt LaButti, Ellen K. Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S. Kun, Ana Carolina dos Santos Gomes, Bernard Henrissat, Jon K. Magnuson, Blake A. Simmons, Miia R. Mäkelä, Uffe H. Mortensen, Igor V. Grigoriev, Matthias Brock, Scott E. Baker, Ronald P. de Vries, Mikael R. Andersen 2024 Journal of Fungi

Xing Wan, Sazzad Shahrear, Shea Wen Chew, Francisco Vilaplana, Miia R. Mäkelä 2024 Biotechnology for Biofuels and Bioproducts

Li Xu, Jiajia Li, Victor Manuel Gonzalez Ramos, Christina Lyra, Ad Wiebenga, Igor V. Grigoriev, Ronald P, de Vries, Miia Mäkelä, Mao Peng 2024 Bioresource Technology

Jiali Meng, Miia Mäkelä, Ronald de Vries 2023 Biomolecules

Astrid Müller, Li Xu, Claudia Heine, Tila Flach, Miia Mäkelä, Ronald P. de Vries 2023 Journal of Fungi

Miia Mäkelä, Hatice Böke, Ellisiv Nyhamar, Xing Wan 2023 Handbook of Biorefinery Research and Technology

Mao Peng, Sander Bervoets, Thommas Chin-A-Woeng, Zoraide Granchi, Kristiina Hilden, Miia R. Makela, Ronald P. de Vries 2023 Microbiological Research

Tania Chroumpi, Natalia Martínez-Reyes, Roland S. Kun, Mao Peng, Anna Lipzen, Vivian Ng, Sravanthi Tejomurthula, Yu Zhang, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. de Vries, Sandra Garrigues 2022 Fungal Genetics and Biology

Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S. Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar-Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S. Clendinen, Nikola Tolic, Igor Grigoriev, Adrian Tsang, Miia R. Mäkelä, Berend Snel, Mao Peng, Ronald P. de Vries 2022 Journal of Fungi

Mila Marinovic, Marcos Di Falco, Maria Victoria Aguilar Pontes, Andras Gorzsas, Adrian Tsang, Ronald de Vries, Miia Mäkelä, Kristiina Hilden 2022 Biomolecules

Jiali Meng, Zoltan Nemeth, Mao Peng, Erzsebet Fekete, Sandra Garrigues, Anna Lipzen, Vivian Ng, Emily Savage, Yu Zhang, Igor Grigoriev, Miia R. Mäkelä, Levente Karaffa, Ronald P. de Vries 2022 Microbial Biotechnology

Jiali Meng, Tania Chroumpi, Miia R. Mäkelä, Ronald P. de Vries 2022 Bioresource Technology

Peicheng Sun, Xinxin Li, Adiphol Dilokpimol, Bernard Henrissat, Ronald P. de Vries, Mirjam A. Kabel, Miia R. Mäkelä 2022 iScience

Felipe Andrés Venegas, Sanna Koutaniemi, Sandra M.J. Langeveld, Annie Bellemare, Sun-Li Chong, Adiphol Dilokpimol, Michael J. Lowden, Kristiina Hilden, Juan Francisco Leyva-Illades, Miia Mäkelä, Thi Thanh My Pham, Mao Peng, Mark A. Hancock, Yun Zheng, Adrian Tsang, Maija Tenkanen, Justin Powlowski, Ronald de Vries 2022 New Biotechnology

V. Viriato, M. R. Mäkelä, J. E. Kowalczyk, C. S. Ballarin, P. P. Loiola, M. C.N. Andrade 2022 Letters in Applied Microbiology

Tania Chroumpi, Mao Peng, Lye Meng Markillie, Hugh D. Mitchell, Carrie D. Nicora, Chelsea M. Hutchinson, Vanessa Paurus, Nikola Tolic, Chaevien S. Clendinen, Galya Orr, Scott E. Baker, Miia R. Mäkelä, Ronald P. de Vries 2021 Frontiers in Bioengineering and Biotechnology

Tania Chroumpi, Mao Peng, Maria Victoria Aguilar-Pontes, Astrid Mueller, Mei Wang, Juying Yan, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. deVries 2021 Microbial Biotechnology

Sandra Garrigues, Roland Kun, Mao Peng, Birgit Gruben, Isabelle Benoit Gelber, Miia Mäkelä, Ronald de Vries 2021 Microbiology Spectrum

Jussi Kontro, Christina Lyra, Milla Koponen, Jaana Kuuskeri, Mika A. Kähkönen, Janne Wallenius, Xing Wan, Jussi Sipilä, Miia Mäkelä, Paula Nousiainen, Kristiina Hildén 2021 Frontiers in Bioengineering and Biotechnology

Joanna E. Kowalczyk, Shreya Saha, Miia R. Mäkelä 2021 Biomolecules

Ronnie J.M. Lubbers, Adiphol Dilokpimol, Jaap Visser, Kristiina S. Hildén, Miia R. Mäkelä, Ronald P. de Vries 2021 Applied and Environmental Microbiology

Jiali Meng, Miia Mäkelä, Ronald de Vries 2021 Advances in Applied Microbiology

Astrid Müller, Joanna Kowalczyk, Miia Mäkelä 2021 Encyclopedia of Mycology

Miia Mäkelä, Kristiina Hilden, Jaana Kuuskeri 2021 Encyclopedia of Mycology

Mao Peng, Claire Khosravi, Ronnie J.M. Lubbers, Roland S. Kun, Maria Victoria Aguilar Pontes, Evy Battaglia, Cindy Chen, Sacha Dalhuijsen, Paul Daly, Anna Lipzen, Vivian Ng, Juying Yan, Mei Wang, Jaap Visser, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. de Vries 2021 The Cell Surface

Agata Terebienic, Tania Chroumpi, Adiphol Dilokpimol, Maria Victoria Aguilar-Pontes, Miia Mäkelä, Ronald de Vries 2021 Biotechnology reports

Janne Wallenius, Jussi Kontro, Christina Lyra, Jaana Kuuskeri, Xing Wan, Mika A. Kähkönen, Irshad Baig, Paul C.J. Kamer, Jussi Sipilä, Miia R. Mäkelä, Paula Nousiainen, Kristiina Hildén 2021 Microbial Biotechnology

Tania Chroumpi, Miia Mäkelä, Ronald de Vries 2020 Biotechnology Advances

Tania Chroumpi, Maria Victoria Aguilar-Pontes, Mao Peng, Mei Wang, Anna Lipzen, Vivian Ng, Igor Grigoriev, Miia R. Makela, Ronald P. de Vries 2020 Microbiological Research

Nancy Cononi Linares, Adiphol Dilokpimol, Henrik Stålbrand, Miia Mäkelä, Ronald de Vries 2020 Bioresource Technology

Paul Daly, Mao Peng, Hugh D. Mitchell, Young Mo Kim, Charles Ansong, Heather Brewer, Peter de Gijsel, Mary S. Lipton, Lye Meng Markillie, Carrie D. Nicora, Galya Orr, Ad Wiebenga, Kristiina S. Hildén, Mirjam A. Kabel, Scott E. Baker, Miia R. Mäkelä, Ronald P. de Vries 2020 Environmental Microbiology

Paul Daly, Mao Peng, Sara Casado López, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Igor Grigoriev, Ronald de Vries, Miia Mäkelä 2020 Journal of Biotechnology

Ronald de Vries, Miia R. Mäkelä 2020 Trends in Microbiology

Adiphol Dilokpimol, Mao Peng, Marcos Di Falco, Thomas Chin A Woeng, Rosa Maria Wilhelmina Hegi, Zoraide Granchi, Adrian Tsang, Kristiina S. Hildén, Miia R. Mäkelä, Ronald P. de Vries 2020 Bioresource Technology

Inge Kjaerbolling, Tammi Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K. Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia R. Makela, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon K. Magnuson, Bernard Henrissat, Uffe H. Mortensen, Thomas O. Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott E. Baker, Mikael R. Andersen 2020 Nature Communications

Jussi Kontro, Riku Maltari, Joona Mikkilä, Mika Kähkönen, Miia R. Mäkelä, Kristiina Hildén, Paula Nousiainen, Jussi Sipilä 2020 Frontiers in Bioengineering and Biotechnology

Roland S. Kun, Jiali Meng, Sonia Salazar-Cerezo, Miia R. Makela, Ronald P. de Vries, Sandra Garrigues 2020 Enzyme and Microbial Technology

Joona Mikkilä, Mikaela Trogen, Klaus A.Y. Koivu, Jussi Kontro, Jaana Kuuskeri, Riku Maltari, Zane Dekere, Marianna Kemell, Miia R. Mäkelä, Paula A. Nousiainen, Michael Hummel, Jussi Sipilä, Kristiina Hildén 2020 ACS Omega

Shingo Miyauchi, Hayat Hage, Elodie Drula, Laurence Lesage-Meessen, Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli, Sacha Grisel, Mireille Haon, Francois Piumi, Anthony Levasseur, Anne Lomascolo, Steven Ahrendt, Kerrie Barry, Kurt M. LaButti, Didier Chevret, Chris Daum, Jerome Mariette, Christophe Klopp, Daniel Cullen, Ronald P. de Vries, Allen C. Gathman, Matthieu Hainaut, Bernard Henrissat, Kristiina S. Hilden, Ursula Kuees, Walt Lilly, Anna Lipzen, Miia Mäkelä, Angel T. Martinez, Melanie Morel-Rouhier, Emmanuelle Morin, Jasmyn Pangilinan, Arthur F. J. Ram, Han A. B. Woesten, Francisco J. Ruiz-Duenas, Robert Riley, Eric Record, Igor Grigoriev, Marie-Noelle Rosso 2020 DNA Research

Miia Mäkelä, Marja Tuomela, Annele Hatakka, Kristiina Hilden 2020 Laccases in Bioremediation and Waste Valorisation

Miia R. Mäkelä, Kristiina Hilden, Joanna E. Kowalczyk, Annele Hatakka 2020 Grand Challenges in Fungal Biotechnology

Sara Casado López, Mao Peng, Paul Daly, Bill Andreopoulos, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Steven Ahrendt, Vivian Ng, Kerrie Barry, Chris Daum, Igor V. Grigoriev, Miia Riitta Mäkelä, Ronald P. de Vries 2019 Microbiology Resource Announcements

Paul Daly, Mao Peng, Marcos Di Falco, Anna Lipzen, Mei Wang, Vivian Ng, Igor Grigoriev, Adrian Tsang, Miia R. Makela, Ronald P. de Vries 2019 Applied and Environmental Microbiology

Joanna Kowalczyk, Mao Peng, Megan Pawlowski, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Igor V. Grigoriev, Miia Mäkelä 2019 Frontiers in Bioengineering and Biotechnology

Roland Kun, Ana Carolina S. Gomes, Sari Kristiina Hilden, Sonia Salazar Cerezo, Miia Riitta Mäkelä, Ronald de Vries 2019 Biotechnology Advances

Nancy Coconi Linares, Marcos Di Falco, Isabelle Benoit-Gelber, Birgit S. Gruben, Mao Peng, Adrian Tsang, Miia R. Mäkelä, Ronald P. de Vries 2019 New Biotechnology

Ronnie J. M. Lubbers, Adiphol Dilokpimol, Jaap Visser, Miia R. Makela, Kristiina S. Hilden, Ronald P. de Vries 2019 Biotechnology Advances

Ronnie J. M. Lubbers, Adiphol Dilokpimol, Mao Peng, Jaap Visser, Miia R. Makela, Kristiina S. Hilden, Ronald P. de Vries 2019 ACS Sustainable Chemistry and Engineering

Io Antonopoulou, Adiphol Dilokpimol, Laura Iancu, Miia R. Mäkelä, Simona Varriale, Gabriella Cerullo, Silvia Huttner, Stefan Uthoff, Peter Juetten, Alexander Piechot, Alexander Steinbuechel, Lisbeth Olsson, Vincenza Faraco, Kristiina S. Hilden, Ronald P. de Vries, Ulrika Rova, Paul Christakopoulos 2018 Catalysts

Paul Daly, Sara Casado López, Mao Peng, Christopher S. Lancefield, Samuel O. Purvine, Young Mo Kim, Erika M. Zink, Alice Dohnalkova, Vasanth R. Singan, Anna Lipzen, David Dilworth, Mei Wang, Vivian Ng, Errol Robinson, Galya Orr, Scott E. Baker, Pieter C.A. Bruijnincx, Kristiina S. Hildén, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. de Vries 2018 Environmental Microbiology

Ronald de Vries, Miia Riitta Mäkelä, Sari Kristiina Hilden, Jörg Kämper 2018 Fungal Genetics and Biology

Adiphol Dilokpimol, Miia Riitta Mäkelä, Simona Varriale, Miaomiao Zhou, Gabriella Cerullo, Loknath Gidijala, Harri Tapio Hinkka, Joana L.A. Brás, Peter Jütten, Alexander Piechot, Raymond Verhaert, Sari Kristiina Hilden, Vincenza Faraco, Ronald de Vries 2018 New Biotechnology

Adiphol Dilokpimol, Miia R. Mäkelä, Gabriella Cerullo, Miaomiao Zhou, Simona Varriale, Loknath Gidijala, Joana L.A. Brás, Peter Jütten, Alexander Piechot, Raymond Verhaert, Vincenza Faraco, Kristiina S. Hilden, Ronald P. de Vries 2018 New Biotechnology

Kristiina Hildén, Miia R. Mäkelä 2018 Reference Module in Life Sciences

Jussi Heikki Samuli Kontro, Paula Annukka Nousiainen, Mika Antero Kähkönen, Uula T Hyväkkö, Joona Aleksi Mikkilä, Miia Riitta Mäkelä, Sari Kristiina Hilden, Antti Jussi Sipilä 2018

Jussi Heikki Samuli Kontro, Paula Annukka Nousiainen, Mika Antero Kähkönen, Joona Aleksi Mikkilä, Miia Riitta Mäkelä, Sari Kristiina Hilden, Antti Jussi Sipilä 2018

Mika Antero Kähkönen, Paula Annukka Nousiainen, Jussi Heikki Samuli Kontro, Mila Marinovic, Irshad Baig, Paul Kamer, Antti Jussi Sipilä, Miia Riitta Mäkelä, Sari Kristiina Hilden 2018

Sara Casado Lopez, Mao Peng, Tedros Yonatan Issak, Paul Daly, Ronald P. de Vries, Miia R. Mäkelä 2018 Applied and Environmental Microbiology

Taina Lundell, Miia Mäkelä 2018 Sienten biologia

Mila Marinovic, Maria Victoria Aguilar-Pontes, Miaomiao Zhou, Otto Kullervo Miettinen, Ronald de Vries, Miia Riitta Mäkelä, Sari Kristiina Hilden 2018 Fungal Genetics and Biology

Mila Marinović, Paula Nousiainen, Adiphol Dilokpimol, Jussi Kontro, Robin Moore, Jussi Sipilä, Ronald P. De Vries, Miia R. Mäkelä, Kristiina Hildén 2018 ACS Sustainable Chemistry and Engineering

Joona Aleksi Mikkilä, Jaana Tuulia Kuuskeri, Miia Riitta Mäkelä, Zane Dekere, Jussi Heikki Samuli Kontro, Paula Annukka Nousiainen, Antti Jussi Sipilä, Sari Kristiina Hilden 2018

Miia R. Mäkelä, Adiphol Dilokpimol, Salla M. Koskela, Jaana Kuuskeri, Ronald P. de Vries, Kristiina Hilden 2018 Microbial Biotechnology

Miia Riitta Mäkelä, Mao Peng, Zoraide Granchi, Thomas Chin-A-Woeng, Rosa Hegi, Sake van Pelt, Steven Ahrendt, Robert Riley, Matthieu Heinaut, Bernard Henrissat, Igor Grigoriev, Ronald de Vries, Sari Kristiina Hilden 2018 Genome Announcements

Miia Riitta Mäkelä, Sari Kristiina Hilden 2018 Fungal Genomics

Miia Riitta Mäkelä, M. Di Falco, E. McDonnell, T.T.M. Nguyen, A. Wiebenga, Sari Kristiina Hilden, M. Peng, I.V. Grigoriev, A. Tsang, R.P. de Vries 2018 Studies in Mycology

Miia R. Mäkelä, Maria Victoria Aguilar-Pontes, Diana van Rossen-Uffink, Mao Peng, Ronald P. de Vries 2018 Scientific Reports

Mao Peng, Maria Victoria Aguilar-Pontes, Matthieu Hainaut, Bernard Henrissat, Kristiina Hilden, Miia R. Mäkelä, Ronald P. de Vries 2018 Fungal Genetics and Biology

Mao Peng, Maria V. Aguilar-Pontes, Ronald P. de Vries, Miia R. Mäkelä 2018 Frontiers in Microbiology

María Victoria Aguilar Pontes, Aleksandrina Patyshakuliyeva, Harm Post, Edita Jurak, Kristiina Hildén, Maarten Altelaar, Albert Heck, Mirjam A. Kabel, Ronald P. de Vries, Miia R. Mäkelä 2018 Fungal Genetics and Biology

Andrew Urquhart, Stephen Mondo, Miia Riitta Mäkelä, James Hane, Ad Wiebenga, Guifen He, Sirma Mihaltcheva, Jasmyn Pangilinan, Anna Lipzen, Kerrie Barry, Ronald de Vries, Igor V. Grigoriev, Alexander Idnurm 2018 Frontiers in Microbiology

Tammi C. Vesth, Jane L. Nybo, Sebastian Theobald, Jens C. Frisvad, Thomas O. Larsen, Kristian F. Nielsen, Jakob B. Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John M. Gladden, Pallavi Phatale, Morten T. Nielsen, Ellen K. Lyhne, Martin E. Kogle, Kimchi Strasser, Erin McDonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt LaButti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Elodie Drula, Adrian Tsang, Jon K. Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A. Simmons, Miia R. Mäkelä, Ronald P. de Vries, Igor V. Grigoriev, Uffe H. Mortensen, Scott E. Baker, Mikael R. Andersen 2018 Nature Genetics

Paul Daly, Gillian G. Slaghek, Sara Casado Lopez, Ad Wiebenga, Kristiina S. Hilden, Ronald P. de Vries, Miia R. Mäkelä 2017 Journal of Microbiological Methods

Ronald P. de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Christiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Özgür Bayram, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Cánovas, Gustavo C. Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato Augusto Corrêa dos Santos, André Ricardo de Lima Damásio, George Diallinas, Tamás Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, María Laura Harispe, Bernard Henrissat, Sari Kristiina Hilden, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karányi, Nada Kraševec, Alan Kuo, Harald Kusch, Kurt LaButti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F. Logrieco, Andrew MacCabe, Miia Riitta Mäkelä, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Márton Miskei, Ákos P. Molnár, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsébet Orosz, Jean Paul Ouedraogo, Karin M. Overkamp, Hee-Soo Park, Giancarlo Perrone, Francois Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Röhrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Rob A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schütze, Kristina Sepčić, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabio M. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie van de Wiele, Diana van Rossen-Uffink, Juliana Velasco de Castro Oliveira, Tammi C. Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R. Andersen, David B. Archer, Scott E. Baker, Isabelle Benoit, Axel A. Brakhage, Gerhard H. Braus, Reinhard Fischer, Jens C. Frisvad, Gustavo H. Goldman, Jos Houbraken, Berl Oakley, István Pócsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A. vanKuyk, Jennifer Wortman, Paul S. Dyer, Igor V. Grigoriev 2017 Genome Biology

Adiphol Dilokpimol, Miia R. Mäkelä, Sadegh Mansouri, Olga Belova, Martin Waterstraat, Mirko Bunzel, Ronald P. de Vries, Kristiina S. Hilden 2017 New Biotechnology

Zoraide Granchi, Mao Peng, Thomas Chi-A-Woeng, Ronald P. de Vries, Kristiina Hilden, Miia Riitta Mäkelä 2017 Genome Announcements

Birgit S. Gruben, Miia R. Mäkelä, Joanna E. Kowalczyk, Miaomiao Zhou, Isabelle Benoit-Gelber, Ronald P. De Vries 2017 BMC Genomics

Mirjam A. Kabel, Edita Jurak, Miia R. Mäkelä, Ronald P. De Vries 2017 Applied Microbiology and Biotechnology

Sara Casado López, Bart Theelen, Serena Manserra, Tedros Yonatan Issak, Johanna Rytioja, Miia R. Mäkelä, Ronald P. De Vries 2017 IMA Fungus

Miia R. Mäkelä, Ourdia Bouzid, Diogo Robl, Harm Post, Mao Peng, Albert Heck, Maarten Altelaar, Ronald P. de Vries 2017 New Biotechnology

Mao Peng, Adiphol Dilokpimol, Miia R. Mäkelä, Kristiina Hildén, Sander Bervoets, Robert Riley, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Ronald P. de Vries, Zoraide Granchi 2017 Journal of Biotechnology

Johanna Rytioja, Kristiina Hildén, Marcos Di Falco, Miaomiao Zhou, Maria Victoria Aguilar-Pontes, Outi Maaria Sietiö, Adrian Tsang, Ronald P. de Vries, Miia R. Mäkelä 2017 Environmental Microbiology

Sara Casado López, Outi-Maaria Sietiö, Sari Kristiina Hilden, Ronald de Vries, Miia Riitta Mäkelä 2016 Gene expression systems in fungi: advancements and applications

Ronald P. de Vries, Joost van den Brink, Kristiina S. Hilden, Miia R. Mäkelä, Henrik Stålbrand 2016 Handbook of Carbohydrate-Modifying Biocatalysts

Ronald P. de Vries, Aleksandrina Patyshakuliyeva, Harm Post, Miaomiao Zhou, Edita Jurak, Albert Heck, Sari Kristiina Hilden, Mirjam Kabel, Miia Riitta Mäkelä, Maarten Altelaar 2016 Science and Cultivation of Edible Fungi

Adiphol Dilokpimol, Miia Riitta Mäkelä, Maria Victoria Aguilar-Pontes, Isabelle Benoit-Gelber, Sari Kristiina Hilden, Ronald de Vries 2016 Biotechnology for Biofuels

Otto Miettinen, Robert Riley, Kerrie Barry, Dan Cullen, Ronald P. de Vries, Matthieu Hainaut, Annele Hatakka, Bernard Henrissat, Kristiina Hildén, Rita Kuo, Kurt LaButti, Anna Lipzen, Miia R. Mäkelä, Laura Sandor, Joseph W. Spatafora, Igor V. Grigoriev, David S. Hibbett 2016 Genome Announcements

Miia Riitta Mäkelä, EL Bredeweg, JK Magnuson, SE Baker, Ronald de Vries, Sari Kristiina Hilden 2016 Microbiology Spectrum

Miia R. Mäkelä, Sadegh Mansouri, Ad Wiebenga, Johanna Rytioja, Ronald P. de Vries, Kristiina S. Hildén 2016 NEW BIOTECHNOLOGY

Miia Riitta Mäkelä, Luis Alexis Jimenez Barboza, Ronald de Vries, Sari Kristiina Hilden 2016 Aspergillus and Penicillium in the post-genomic era

Isabelle Benoit, Helena Culleton, Miaomiao Zhou, Marcos DiFalco, Guillermo Aguilar-Osorio, Evy Battaglia, Ourdia Bouzid, Carlo P.J.M. Brouwer, Hala B.O. El-Bushari, Pedro M. Coutinho, Birgit S. Gruben, Kristiina S. Hildén, Jos Houbraken, Luis Alexis Jiménez Barboza, Anthony Levasseur, Eline Majoor, Miia R. Mäkelä, Hari Mander Narang, Blanca Trejo-Aguilar, Joost Van Den Brink, Patricia A. VanKuyk, Ad Wiebenga, Vincent McKie, Barry McCleary, Adrian Tsang, Bernard Henrissat, Ronald P. De Vries 2015 Biotechnology for Biofuels

Jaana Tuulia Kuuskeri, Miia Riitta Mäkelä, Jarkko Mikael Isotalo, Ilona Maria Oksanen, Taina Kristina Lundell 2015 BMC Microbiology

Maija Kymäläinen, Miia Mäkelä, Kristiina Hildén, Jussi Kukkonen 2015 European Journal of Wood and Wood Products

Lene Lange, Bryndís Björnsdóttir, Asbjorn Brandt, Sari Kristiina Hilden, Gudmundur Óli Hreggvidsson, Birgitte Jacobsen, Amialie Jessen, Eva Nordberg Karlsson, Jane Lindedam, Miia Riitta Mäkelä, Sigrún Elsa Smáradóttir, Janus Vang, Alexander Wentzel 2015

Miia R. Mäkelä, Mila Marinović, Paula Nousiainen, April J.M. Liwanag, Isabelle Benoit, Jussi Sipilä, Annele Hatakka, Ronald P. de Vries, Kristiina S. Hildén 2015 Advances in Applied Microbiology

Aleksandrina Patyshakuliyeva, Harm Post, Miaomiao Zhou, Edita Jurak, Albert J R Heck, Kristiina S. Hildén, Mirjam A. Kabel, Miia R. Mäkelä, Maarten A F Altelaar, Ronald P. De Vries 2015 Environmental Microbiology

Johanna Rytioja, Kristiina Hildén, Susanna Mäkinen, Jari Vehmaanperä, Annele Hatakka, Miia R. Mäkelä 2015 PloS one

Outi-Maaria Sietiö, Miia Riitta Mäkelä, Sari Kristiina Hilden 2015 Current Biotechnology

Kristiina Hilden, Miia Mäkelä, Kari Steffen, Martin Hofrichter, Annele Hatakka, David Archer, Taina Lundell 2014 Fungal Genetics and Biology

Taina K. Lundell, Miia R. Mäkelä, Ronald P. de Vries, Kristiina S. Hilden 2014 Advances in Botanical Research

Miia R. Makela, Outi-Maaria Sietiö, Ronald P. de Vries, Sari Timonen, Kristiina Hilden 2014 PloS one

Miia Mäkelä, Kristiina Hilden, Ronald de Vries 2014 Fungal genomics

Miia Riitta Mäkelä, Nicole Donofrio, Ronald de Vries 2014 Fungal Genetics and Biology

Miia Mäkelä, Nicole Donofrio, Ronald de Vries 2014 Fungal Genetics and Biology

Aleksandrina Patyshakuliyeva, Miia Mäkelä, Outi-Maaria Sietiö, Ronald de Vries, Kristiina Hilden 2014 Fungal Genetics and Biology

Johanna Rytioja, Kristiina Hildén, Jennifer Yuzon, Annele Hatakka, Ronald P. De Vries, Miia R. Mäkelä 2014 Microbiology and Molecular Biology Reviews

Johanna Rytioja, Kristiina Hildén, Annele Hatakka, Miia R. Mäkelä 2014 Fungal Genetics and Biology

Heikki Salavirta, Ilona Oksanen, Jaana Kuuskeri, Miia Makela, Pia Laine, Lars Paulin, Taina Lundell 2014 PloS one

Aniko Varnai, Miia R. Mäkelä, Demi T. Djajadi, Jenni Rahikainen, Annele Hatakka, Liisa Viikari 2014 Advances in Applied Microbiology

Kristiina Hilden, Miia Mäkelä, Pauliina Lankinen, Taina Lundell 2013 Fungal Genetics and Biology

Kristiina Hilden, Miia Mäkelä, Taina Lundell, Jaana Tuulia Kuuskeri, Alexey Chernykh, Ludmila Golovleva, David Archer, Annele Hatakka 2013 Applied Microbiology and Biotechnology

Miia Mäkelä, Taina Lundell, Annele Hatakka, Kristiina Hilden 2013 Fungal Biology

Paula Annukka Nousiainen, Jussi Kontro, Helmiina Manner, Johanna Rytioja, Miia Mäkelä, Pekka Maijala, Taina Lundell, Annele Hatakka, Jussi Sipilä 2013

Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter De Bruijn, Kerry S. Burton, Michael P. Challen, Pedro M. Coutinho, Daniel C. Eastwood, Birgit S. Gruben, Miia R. Mäkelä, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P. De Vries 2013 BMC Genomics

Paula Annukka Nousiainen, Jussi Heikki Samuli Kontro, Maija Helmiina Manner, Miia Riitta Mäkelä, Sari Kristiina Hilden, Pekka Mikael Maijala, Taina Kristina Lundell, Annele Inkeri Hatakka, Antti Jussi Sipilä 2012 OxiZymes 16.-19.9. 2012, proceedings book p. 123. Poster

Paula Annukka Nousiainen, Jussi Kontro, Helmiina Manner, Miia Mäkelä, Kristiina Hilden, Pekka Maijala, Taina Lundell, Annele Hatakka, Jussi Sipilä 2012 EWLP 2012

Kristiina Hilden, Taina Lundell, Miia Mäkelä, Johanna Rytioja, Paula Annukka Nousiainen, Jussi Sipilä, A Chernykh, L Golovleva, D Archer, Annele Hatakka 2010 1st Symposium on Biotechnology Applied to Lignocelluloses, Lignobiotech One

Kristiina Hilden, Taina Lundell, Miia Mäkelä, Johanna Rytioja, Paula Annukka Nousiainen, Jussi Sipilä, D Archer, A Chernykh, L Golovleva, Annele Hatakka 2010 Oxidative enzymes as sustainable industrial biocatalysts (OESIB)

Taina K. Lundell, Miia R. Makela, Kristiina Hilden 2010 Journal of Basic Microbiology

Miia Riitta Mäkelä, Kristiina Hilden, Taina K. Lundell 2010 Applied Microbiology and Biotechnology

Miia R. Makela, Kristiina Hilden, Annele Hatakka, Taina K. Lundell 2009 Microbiology

Miia Riitta Mäkelä 2009

Kristiina Hilden, Miia R Mäkelä, Terhi K Hakala, Annele Hatakka, Taina Lundell 2006 Current Genetics

Miia R Mäkelä, Kristiina Hilden, Terhi K. Hakala, Annele Hatakka, Taina K Lundell 2006 Current Genetics

Kristiina Hilden, Miia Mäkelä, Annele Hatakka, Taina Lundell 2004 Oxizymes in Naples

M Makela, S Galkin, A Hatakka, T Lundell 2002 Enzyme and Microbial Technology

Miia Mäkelä 2000
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